Jan Henkel 1, Andreas Laner 2, Melanie Locher 3, Tobias Wohlfrom 4, Birgit Neitzel 5, Kerstin Becker 6, Teresa Neuhann 7, Angela Abicht 8, Verena Steinke-Lange 9, Barbara Klink 10, Birgit Eichhorn 11, Winfried Schmidt 12, Daniel Berner 13, Anna Teubert 14, Anne Holtorf 15, Sarah Heinrich 16, Gabriele Wildhardt 17, Martin Schulze 18, Laura von der Heyden 19, Konstanze Hörtnagel 20, Daniela Steinberger 21, Saskia Kleier 22, Peter Lorenz 23, Ralf Glaubitz 24, Saskia Biskup 25, Elke Holinski-Feder 26
Abstract
As multigene panel testing is becoming routine in clinical care, there are recommendations at national and international level, as to which genes should be analyzed in the context of a hereditary breast and ovarian cancer (HBOC). However, the individual composition of gene panels offered by testing laboratories vary, resulting in a different variant diagnostic rate. Therefore, we performed a retrospective NGS dataset analysis of suspected HBOC patients who had been tested at different German diagnostic laboratories that are part of the NASGE network. We collected 29,317 HBOC datasets and compared the diagnostic yield applying the most common panel recommendations and an internal HBOC gene panel. Additionally, we analyzed the data concerning other potential tumor risk syndromes (TRS) not caused by pathogenic variants in the core panel genes. At least one pathogenic variant causative for an autosomal-dominant TRS was identified in 4235 datasets, resulting in an overall diagnostic yield of 14.4 %. The diagnostic yield of pathogenic variants varied depending on the applied HBOC panel (between 5 and 26 genes) from 9.0 % to 13.8 % with the internal HBOC panel having a yield of 12.7 %. Notably, in about 1 % of cases, a pathogenic variant outside the established HBOC core genes was identified, indicating the presence of other TRS. These results are consistent with previous observations that a significant proportion of patients with HBOC predisposition were not detected by the guideline-based gene panels and suggest that expanded diagnostics compared to currently recommended multigene panels may identify additional patients at high risk for developing cancer.
Keywords: Gene panel testing; Genetic predisposition to disease; Genetic testing; Genetic variation; Hereditary; Hereditary breast and ovarian cancer syndrome; High-throughput nucleotide sequencing; Neoplastic syndromes; Retrospective studies; Risk assessment.
- Medical Genetics Center (MGZ), Bayerstr. 3-5, 80335, Munich, Germany. Electronic address: Jan.Henkel@mgz-muenchen.de.
- Medical Genetics Center (MGZ), Bayerstr. 3-5, 80335, Munich, Germany; NASGE, Nationale Allianz für seltene genetische Erkrankungen, Germany. Electronic address: Andreas.Laner@mgz-muenchen.de.
- Medical Genetics Center (MGZ), Bayerstr. 3-5, 80335, Munich, Germany; NASGE, Nationale Allianz für seltene genetische Erkrankungen, Germany. Electronic address: Melanie.Locher@mgz-muenchen.de.
- Medical Genetics Center (MGZ), Bayerstr. 3-5, 80335, Munich, Germany. Electronic address: Tobias.Wohlfrom@mgz-muenchen.de.
- Medical Genetics Center (MGZ), Bayerstr. 3-5, 80335, Munich, Germany. Electronic address: Birgit.Neitzel@mgz-muenchen.de.
- Medical Genetics Center (MGZ), Bayerstr. 3-5, 80335, Munich, Germany; NASGE, Nationale Allianz für seltene genetische Erkrankungen, Germany. Electronic address: Kerstin.Becker@mgz-muenchen.de.
- Medical Genetics Center (MGZ), Bayerstr. 3-5, 80335, Munich, Germany; NASGE, Nationale Allianz für seltene genetische Erkrankungen, Germany. Electronic address: Teresa.Neuhann@mgz-muenchen.de.
- Medical Genetics Center (MGZ), Bayerstr. 3-5, 80335, Munich, Germany; NASGE, Nationale Allianz für seltene genetische Erkrankungen, Germany; Friedrich-Baur-Institute, Department of Neurology, Klinikum der Universität, Ludwig-Maximilians-Universität, Ziemssenstr. 1a, 80336, Munich, Germany. Electronic address: Angela.Abicht@mgz-muenchen.de.
- Medical Genetics Center (MGZ), Bayerstr. 3-5, 80335, Munich, Germany; NASGE, Nationale Allianz für seltene genetische Erkrankungen, Germany. Electronic address: Verena.Steinke-Lange@mgz-muenchen.de.
- Medical Genetics Center (MGZ), Bayerstr. 3-5, 80335, Munich, Germany. Electronic address: Barbara.Klink@mgz-muenchen.de.
- MVZ Mitteldeutscher Praxisverband Humangenetik GmbH, Friedrichstr. 38-40, 01067, Dresden, Germany. Electronic address: Eichhorn@genetik-dresden.de.
- Gemeinschaftspraxis für Humangenetik GbR, Altonaer Str. 61, 20357, Hamburg, Germany. Electronic address: wschmidt@dna-diagnostik.hamburg.
- MVZ genetikum® GmbH, Wegenerstr. 15, 89231, Neu-Ulm, Germany. Electronic address: Daniel.Berner@ctde.eurofinseu.com.
- NASGE, Nationale Allianz für seltene genetische Erkrankungen, Germany; amedes Medizinische Dienstleistungen GmbH, Anna-Anderhoeck-Ring 4-8, 37081, Göttingen, Germany. Electronic address: Anna.Teubert@amedes-group.com.
- MVZ Martinsried GmbH, Lochhamer Str. 29, 82152, Martinsried, Germany. Electronic address: anne.holtorf@medicover.com.
- MVZ Martinsried GmbH, Lochhamer Str. 29, 82152, Martinsried, Germany. Electronic address: sarah.heinrich@medicover.com.
- MVZ diagnosticum Frankfurt, Zentrum für Humangenetik, Altenhöferallee 3, 60438, Frankfurt am Main, Germany. Electronic address: gabriele.wildhardt@genetik.diagnosticum.eu.
- CeGaT GmbH, Center for Genomics and Transcriptomics Tübingen, Paul-Ehrlich-Str. 23, 72076, Tübingen, Germany. Electronic address: martin.schulze@humangenetik-tuebingen.de.
- NASGE, Nationale Allianz für seltene genetische Erkrankungen, Germany; MVZ genetikum® GmbH, Wegenerstr. 15, 89231, Neu-Ulm, Germany. Electronic address: vonderHeyden@genetikum.de.
- NASGE, Nationale Allianz für seltene genetische Erkrankungen, Germany; MVZ Martinsried GmbH, Lochhamer Str. 29, 82152, Martinsried, Germany. Electronic address: konstanze.hoertnagel@medicover.com.
- NASGE, Nationale Allianz für seltene genetische Erkrankungen, Germany; MVZ diagnosticum Frankfurt, Zentrum für Humangenetik, Altenhöferallee 3, 60438, Frankfurt am Main, Germany. Electronic address: daniela.steinberger@genetik.diagnosticum.eu.
- NASGE, Nationale Allianz für seltene genetische Erkrankungen, Germany; Gemeinschaftspraxis für Humangenetik GbR, Altonaer Str. 61, 20357, Hamburg, Germany. Electronic address: kleier@praenatalzentrum.de.
- NASGE, Nationale Allianz für seltene genetische Erkrankungen, Germany; MVZ Mitteldeutscher Praxisverband Humangenetik GmbH, Friedrichstr. 38-40, 01067, Dresden, Germany. Electronic address: lorenz@genetik-meerane.de.
- NASGE, Nationale Allianz für seltene genetische Erkrankungen, Germany; amedes Medizinische Dienstleistungen GmbH, Anna-Anderhoeck-Ring 4-8, 37081, Göttingen, Germany. Electronic address: ralf.Glaubitz@amedes-group.com.
- NASGE, Nationale Allianz für seltene genetische Erkrankungen, Germany; CeGaT GmbH, Center for Genomics and Transcriptomics Tübingen, Paul-Ehrlich-Str. 23, 72076, Tübingen, Germany. Electronic address: Saskia.Biskup@humangenetik-tuebingen.de.
- Medical Genetics Center (MGZ), Bayerstr. 3-5, 80335, Munich, Germany; NASGE, Nationale Allianz für seltene genetische Erkrankungen, Germany; Department of Medicine IV, Klinikum der Universität, Ludwig-Maximilians-Universität, Ziemssenstr. 5, 80336, Munich, Germany. Electronic address: elke.holinski-feder@mgz-muenchen.de.